;; -*- lexical-binding: t; -*-

(setq user-full-name "Yann Herklotz")
(setq user-mail-address "yann@yannherklotz.com")

(setq gc-cons-threshold (* 1024 1024 1024))

(global-set-key (kbd "M-u")   #'upcase-dwim)
(global-set-key (kbd "M-l")   #'downcase-dwim)
(global-set-key (kbd "M-c")   #'capitalize-dwim)
(global-set-key (kbd "C-c z") #'quick-calc)
(global-set-key (kbd "<f5>")  #'revert-buffer)
(global-set-key (kbd "C-.")   #'other-window)
(global-set-key (kbd "C-,")   #'ymhg/prev-window)
(global-set-key (kbd "C-\\")  #'undo-only)
(global-set-key (kbd "M-SPC")  (lambda () (interactive) (insert " ")))
(global-set-key (kbd "C-<tab>") #'tab-bar-switch-to-recent-tab)

(global-set-key (kbd "C-c l") #'org-store-link)
(global-set-key (kbd "C-c c") #'org-capture)

(define-prefix-command 'ymh-map)
(global-set-key (kbd "C-c y") 'ymh-map)
(define-key ymh-map (kbd "o") #'ymhg/reset-coq-windows)
(define-key ymh-map (kbd "c") #'calendar)
(define-key ymh-map (kbd "C-l") #'org-agenda-open-link)
(define-key ymh-map (kbd "C-p") #'org-previous-link)
(define-key ymh-map (kbd "C-n") #'org-next-link)
;;(define-key y-map (kbd "C-g") #'org-zettelkasten-goto-id)

(set-register ?l (cons 'file "~/.emacs.d/loader.org"))
(set-register ?m (cons 'file "~/Dropbox/org/meetings.org"))
(set-register ?i (cons 'file "~/Dropbox/org/inbox.org"))
(set-register ?p (cons 'file "~/Dropbox/org/projects.org"))
(set-register ?c (cons 'file (format-time-string "~/Dropbox/org/%Y-%m.org")))

(defvar bootstrap-version)
(let ((bootstrap-file
       (expand-file-name "straight/repos/straight.el/bootstrap.el" user-emacs-directory))
      (bootstrap-version 6))
  (unless (file-exists-p bootstrap-file)
    (with-current-buffer
        (url-retrieve-synchronously
         "https://raw.githubusercontent.com/radian-software/straight.el/develop/install.el"
         'silent 'inhibit-cookies)
      (goto-char (point-max))
      (eval-print-last-sexp)))
  (load bootstrap-file nil 'nomessage))
(setq straight-use-package-by-default t)

(straight-use-package 'use-package)

(use-package ymh-common
  :straight nil
  :load-path "ymh-emacs")

(use-package emacs
  :straight nil
  :init
  (setq gnus-init-file (concat user-emacs-directory "gnus.el"))
  
  (setq-default fill-column 80)

  (setq completion-cycle-threshold 3)
  (setq tab-always-indent 'complete)

  (setq use-short-answers t)
  (setq inhibit-startup-message t)
  (setq confirm-nonexistent-file-or-buffer nil)
  (setq ring-bell-function 'ignore)
  (setq sentence-end-double-space t)
  (setq truncate-partial-width-windows nil)
  (setq-default bidi-paragraph-direction 'left-to-right)
  (if (version<= "27.1" emacs-version)
      (setq bidi-inhibit-bpa t))
  ;; Set up dictionaries
  (setq read-extended-command-predicate
        #'command-completion-default-include-p)

  (setq enable-recursive-minibuffers t)

  (setq face-remapping-alist '((proof-locked-face . region)))

  (defvar --backup-directory)
  (setq --backup-directory (concat user-emacs-directory "backups"))
  (if (not (file-exists-p --backup-directory))
      (make-directory --backup-directory t))
  (setq backup-directory-alist `(("." . ,--backup-directory)))
  (setq make-backup-files t               ; backup of a file the first time it is saved.
        backup-by-copying t               ; don't clobber symlinks
        version-control t                 ; version numbers for backup files
        delete-old-versions t             ; delete excess backup files silently
        delete-by-moving-to-trash t
        kept-old-versions 6               ; oldest versions to keep when a new numbered backup is made (default: 2)
        kept-new-versions 9               ; newest versions to keep when a new numbered backup is made (default: 2)
        auto-save-default t               ; auto-save every buffer that visits a file
        auto-save-timeout 20              ; number of seconds idle time before auto-save (default: 30)
        auto-save-interval 200            ; number of keystrokes between auto-saves (default: 300)
        )

  (setq vc-follow-symlinks t)

  (setq-default indent-tabs-mode nil)
  (setq-default tab-width 4)
  (setq-default python-indent-offset 4)
  (setq-default c-basic-offset 4)

  (setq line-number-display-limit 2000000)

  (setq default-frame-alist '((undecorated . t)
                              (drag-internal-border . 1)
                              (internal-border-width . 5)))

  (setq auth-sources '("~/.authinfo" "~/.authinfo.gpg" "~/.netrc"))
  (setq wdired-allow-to-change-permissions t)

  (add-hook 'text-mode-hook #'visual-line-mode)
  :config
  (unless (string= system-type "darwin")
    (menu-bar-mode -1))
  (tool-bar-mode -1)
  (scroll-bar-mode -1)

  ;; Enable those
  (dolist (c '(overwrite-mode narrow-to-region narrow-to-page upcase-region downcase-region))
    (put c 'disabled nil))

  (set-face-attribute 'default nil :font "Iosevka YMHG Medium-12")

  (setq auto-mode-alist
        (append
         (list ;;'("\\.\\(vcf\\|gpg\\)\\'" . sensitive-minor-mode)
          '("\\.v\\'" . coq-mode)
          '("\\.sv\\'" . verilog-mode)
          '("\\.mkiv\\'" . context-mode)
          '("\\.mkii\\'" . context-mode)
          '("\\.mkxl\\'" . context-mode))
         auto-mode-alist))

  ;; Mac configuration
  (when (eq system-type 'darwin)
    (progn (setq mac-right-option-modifier 'none
                 mac-command-modifier 'meta
                 mac-option-modifier nil)
           (add-hook 'ns-system-appearance-change-functions #'ymhg/apply-theme))))

(use-package ymh-diary
  :straight nil
  :load-path "ymh-emacs")

(use-package shr
  :straight nil
  :init
  (setq shr-use-fonts nil)
  (setq shr-max-image-proportion 0.5))

(use-package browse-url
  :straight nil
  :init
  (setq browse-url-handlers
        '(("wikipedia\\.org"                . eww-browse-url)
          ("yannherklotz\\.com"             . eww-browse-url)
          ("ymhg\\.org"                     . eww-browse-url)
          ("archlinux\\.org"                . eww-browse-url)
          ("sachachua\\.com"                . eww-browse-url)
          ("comonad\\.com"                  . eww-browse-url)
          ("drewdevault\\.com"              . eww-browse-url)
          ("wordpress\\.com"                . eww-browse-url)
          ("mathbabe\\.org"                 . eww-browse-url)
          ("ethz\\.ch"                      . eww-browse-url)
          ("pragmaticemacs\\.com"           . eww-browse-url))))

(use-package message
  :straight nil
  :init
  (setq message-send-mail-function 'message-send-mail-with-sendmail)
  (setq message-fill-column 80)

  (setq message-signature "Yann Herklotz
Imperial College London
https://yannherklotz.com"))

(use-package ispell
  :straight nil
  :init
  (setq ispell-dictionary "british"))

(use-package delight
  :config
  (delight 'auto-revert-mode nil "autorevert")
  (delight 'eldoc-mode nil "eldoc"))

(use-package project
  :straight nil
  :init
  (setq project-switch-commands
        '((project-find-file "Find file")
          (project-find-regexp "Find regexp")
          (project-find-dir "Find directory")
          (project-vc-dir "VC-Dir")
          (magit-project-status "Magit")
          (project-eshell "Eshell")))
  :config
  (define-key project-prefix-map "m" #'magit-project-status))

(use-package tab-bar
  :straight nil
  :init
  (setq tab-bar-show nil)
  (setq tab-bar-select-tab-modifiers '(meta))
  :config
  (tab-bar-mode 1))

(use-package flyspell
  :config
  (unbind-key "C-." flyspell-mode-map)
  (unbind-key "C-," flyspell-mode-map)
  (setq flyspell-mouse-map (make-sparse-keymap)))

(use-package calc-forms
  :straight nil
  :config
  (add-to-list 'math-tzone-names '("AOE" 12 0))
  (add-to-list 'math-tzone-names '("IST" (float -55 -1) 0)))

(use-package calendar
  :straight nil
  :config
  (setq calendar-mark-diary-entries-flag t)
  (setq calendar-mark-holidays-flag t)
  (setq calendar-mode-line-format nil)
  (setq calendar-time-display-form
        '(24-hours ":" minutes
                   (when time-zone
                     (format "(%s)" time-zone))))
  (setq calendar-week-start-day 1)      ; Monday
  (setq calendar-date-style 'iso)
  (setq calendar-date-display-form calendar-iso-date-display-form)
  (setq calendar-time-zone-style 'numeric) ; Emacs 28.1
  (add-hook 'calendar-today-visible-hook #'calendar-mark-today)
  (remove-hook 'calendar-mode-hook #'org--setup-calendar-bindings)
  (let ((map calendar-mode-map))
    (define-key map (kbd "s") #'calendar-sunrise-sunset)
    (define-key map (kbd "l") #'lunar-phases)
    (define-key map (kbd "i") nil) ; Org sets this, much to my chagrin (see `remove-hook' above)
    (define-key map (kbd "i a") #'diary-insert-anniversary-entry)
    (define-key map (kbd "i c") #'diary-insert-cyclic-entry)
    (define-key map (kbd "i d") #'diary-insert-entry) ; for current "day"
    (define-key map (kbd "i m") #'diary-insert-monthly-entry)
    (define-key map (kbd "i w") #'diary-insert-weekly-entry)
    (define-key map (kbd "i y") #'diary-insert-yearly-entry)
    (define-key map (kbd "M-n") #'calendar-forward-month)
    (define-key map (kbd "M-p") #'calendar-backward-month)))

(use-package cal-dst
  :straight nil
  :config
  (setq calendar-standard-time-zone-name "+0000")
  (setq calendar-daylight-time-zone-name "+0100"))

(use-package diary-lib
  :straight nil
  :config
  (setq diary-file "~/Dropbox/org/diary")
  (setq diary-date-forms diary-iso-date-forms)
  (setq diary-comment-start ";;")
  (setq diary-comment-end "")
  (setq diary-nonmarking-symbol "!")
  (setq diary-show-holidays-flag t)
  (setq diary-display-function #'diary-fancy-display) ; better than its alternative
  (setq diary-header-line-format nil)
  (setq diary-list-include-blanks nil)
  (setq diary-number-of-entries 2)
  (setq diary-mail-days 2)
  (setq diary-abbreviated-year-flag nil)
  ;;(add-hook 'diary-list-entries-hook #'diary-fix-timezone t)
  (add-hook 'diary-list-entries-hook #'diary-sort-entries t)
  (add-hook 'diary-list-entries-hook 'diary-include-other-diary-files)
  (add-hook 'diary-mark-entries-hook 'diary-mark-included-diary-files))

(use-package appt
  :straight nil
  :init
  (setq appt-display-diary nil)
  (setq appt-disp-window-function #'appt-disp-window)
  (setq appt-display-mode-line t)
  (setq appt-display-interval 3)
  (setq appt-audible nil)
  (setq appt-warning-time-regexp "appt \\([0-9]+\\)")
  (setq appt-message-warning-time 15)
  :config
  (run-at-time 10 nil #'appt-activate 1))

(use-package savehist
  :straight nil
  :init
  (savehist-mode))

(use-package ef-themes
  :config
  (load-theme 'ef-dark t))

(use-package modus-themes
  :config
  ;;(load-theme 'modus-vivendi t)
  )

(use-package pass
  :bind (:map ymh-map
              ("q" . password-store-otp-token-copy)
              ("p" . password-store-copy)
              ("i" . password-store-insert)
              ("g" . password-store-generate)))

(use-package magit)

(use-package org
  :init
  (setq org-startup-indented nil)
  (setq org-src-window-setup 'current-window)
  (setq org-return-follows-link t)
  (setq org-confirm-babel-evaluate nil)
  (setq org-use-speed-commands t)
  (setq org-hide-emphasis-markers nil)
  (setq org-adapt-indentation nil)
  (setq org-cycle-separator-lines 2)
  (setq org-startup-folded 'content)
  (setq org-structure-template-alist '(("a" . "export ascii")
                                       ("c" . "center")
                                       ("C" . "comment")
                                       ("e" . "example")
                                       ("E" . "export")
                                       ("h" . "export html")
                                       ("l" . "export latex")
                                       ("q" . "quote")
                                       ("s" . "src")
                                       ("v" . "verse")
                                       ("el" . "src emacs-lisp")
                                       ("d" . "definition")
                                       ("t" . "theorem")))
  (setq org-attach-auto-tag "attach")
  (setq org-reverse-note-order t)
  (setq org-fast-tag-selection-single-key 'expert)

  (setq org-log-done 'time)
  (setq org-log-into-drawer t)

  (setq org-icalendar-include-todo t)
  (setq org-icalendar-include-bbdb-anniversaries t)

  (setq org-refile-targets `(("~/Dropbox/org/main.org" :level . 1)
                             ("~/Dropbox/org/someday.org" :level . 1)
                             ("~/Dropbox/org/projects.org" :maxlevel . 2)
                             (,(format-time-string "~/Dropbox/org/%Y-%m.org") :level . 1)))

  (setq org-todo-keywords
        '((sequence
           "TODO(t)"  ; A task that needs doing & is ready to do
           "PROJ(p)"  ; A project, which usually contains other tasks
           "STRT(s)"  ; A task that is in progress
           "WAIT(w)"  ; Something external is holding up this task
           "HOLD(h)"  ; This task is paused/on hold because of me
           "DELG(l)"  ; This task is delegated
           "SMDY(m)" ; todo some day
           "|"
           "DONE(d!)"  ; Task successfully completed
           "KILL(k)") ; Task was cancelled, aborted or is no longer applicable
          (sequence
           "[ ](T)"   ; A task that needs doing
           "[-](S)"   ; Task is in progress
           "[?](W)"   ; Task is being held up or paused
           "|"
           "[X](D)")))
  (setq org-todo-keyword-faces '(("[-]" . "yellow")
                                 ("STRT" . (:background "aquamarine"))
                                 ("[?]" . (:weight bold))
                                 ("WAIT" . "yellow")
                                 ("HOLD" . "yellow")
                                 ("DELG" . "goldenrod")
                                 ("SMDY" . "cadet blue")
                                 ("PROJ" . (:background "sea green" :weight bold))
                                 ("NO" . (:background "dark salmon"))
                                 ("KILL" . "pale green")))
  (setq org-html-head-include-default-style nil)
  (setq org-html-head-include-scripts nil)
  (setq org-html-doctype "html5")
  (setq org-html-html5-fancy t)
  (setq org-html-container-element "section")
  (setq org-html-postamble-format '(("en" "")))
  (setq org-html-postamble t)
  (setq org-html-divs '((preamble "header" "header")
                        (content "article" "content")
                        (postamble "footer" "postamble")))

  (setq org-export-with-broken-links t)
  :config
  (unbind-key "C-," org-mode-map))

(use-package org-agenda
  :straight nil
  :bind ("C-c a" . org-agenda)
  :init
  (setq org-agenda-files (mapcar 'expand-file-name
                                 (list "~/Dropbox/org/inbox.org"
                                       "~/Dropbox/org/main.org"
                                       "~/Dropbox/org/tickler.org"
                                       "~/Dropbox/org/projects.org"
                                       (format-time-string "~/Dropbox/org/%Y-%m.org")
                                       "~/Dropbox/bibliography/reading_list.org")))
  (setq org-agenda-custom-commands
        '(("w" "At work" tags-todo "@work"
           ((org-agenda-overriding-header "Work")))
          ("h" "At home" tags-todo "@home"
           ((org-agenda-overriding-header "Home")))
          ("u" "At uni" tags-todo "@uni"
           ((org-agenda-overriding-header "University")))))
  (setq org-agenda-tag-filter '("-backed"))
  (setq org-agenda-span 7)
  (setq org-agenda-start-day ".")
  (setq org-agenda-start-on-weekday nil)
  (setq org-agenda-include-diary t)
  (setq org-agenda-skip-deadline-if-done t)
  (setq org-agenda-skip-scheduled-if-done t)
  (setq org-agenda-show-all-dates t))

(use-package org-capture
  :straight nil
  :bind ("C-c c" . org-capture)
  :init
  (setq org-capture-templates
        `(("t" "Todo" entry (file "inbox.org")
           "* TODO %?
  :PROPERTIES:
  :ID: %(org-id-uuid)
  :END:
  :LOGBOOK:
  - State \"TODO\"       from \"\"           %U
  :END:" :empty-lines 1)
          ("l" "Link Todo" entry (file "inbox.org")
           "* TODO %?
  :PROPERTIES:
  :ID: %(org-id-uuid)
  :END:
  :LOGBOOK:
  - State \"TODO\"       from \"\"           %U
  :END:

  %a" :empty-lines 1)
          ("c" "Contacts" entry (file "~/Dropbox/org/contacts.org")
           "* %(org-contacts-template-name)
    :PROPERTIES:
    :EMAIL: %(org-contacts-template-email)
    :END:" :empty-lines 1))))

(use-package org-habit
  :straight nil)

(use-package org-crypt
  :straight nil
  :after org
  :config
  (org-crypt-use-before-save-magic)
  (setq org-tags-exclude-from-inheritance '("crypt"))
  (setq org-crypt-key "8CEF4104683551E8"))

(use-package org-id
  :straight nil
  :after org
  :config
  (setq org-id-link-to-org-use-id 'use-existing)
  (setq org-id-track-globally t))

(use-package org-transclusion
  :after org
  :config
  (setq org-transclusion-exclude-elements nil))

(use-package org-zettelkasten
  :after org
  :init
  (setq org-zettelkasten-directory "~/Dropbox/zk")
  :config
  (defun org-zettelkasten-goto-id (id)
    "Go to an ID."
    (interactive "sID: #")
    (cond ((string-prefix-p "1" id)
           (org-link-open-from-string
            (concat "[[file:" org-zettelkasten-directory
                    "/hls.org::#" id "]]")))
          ((string-prefix-p "2" id)
           (org-link-open-from-string
            (concat "[[file:" org-zettelkasten-directory
                    "/computing.org::#" id "]]")))
          ((string-prefix-p "3" id)
           (org-link-open-from-string
            (concat "[[file:" org-zettelkasten-directory
                    "/verification.org::#" id "]]")))
          ((string-prefix-p "4" id)
           (org-link-open-from-string
            (concat "[[file:" org-zettelkasten-directory
                    "/mathematics.org::#" id "]]")))
          ((string-prefix-p "5" id)
           (org-link-open-from-string
            (concat "[[file:" org-zettelkasten-directory
                    "/hardware.org::#" id "]]")))))
  (define-key ymh-map (kbd "C-g") #'org-zettelkasten-goto-id)

  (define-key ymh-map (kbd "s")
    (lambda () (interactive)
      (let ((org-agenda-files
             '("~/Dropbox/zk/hls.org"
               "~/Dropbox/zk/computing.org"
               "~/Dropbox/zk/verification.org"
               "~/Dropbox/zk/mathematics.org"
               "~/Dropbox/zk/hardware.org"))) (org-search-view))))
  (add-hook 'org-mode-hook #'org-zettelkasten-mode))

(use-package pdf-tools
  :config
  (pdf-tools-install))

(use-package flycheck
  :delight flycheck-mode)

(use-package rst)

(use-package boogie-friends
  :config
  (setq flycheck-dafny-executable (executable-find "dafny"))
  (setq dafny-verification-backend 'cli))

(use-package direnv
  :config
  (direnv-mode))

(use-package orderless
  :init
  (setq completion-styles '(substring orderless basic)))

(use-package vertico
  :init
  (setq read-file-name-completion-ignore-case t)
  (setq read-buffer-completion-ignore-case t)
  (setq completion-ignore-case t)
  (setq completion-category-defaults nil)
  (vertico-mode))

(use-package corfu
  :init
  (global-corfu-mode))

(use-package consult
  :bind (("M-s r" . consult-ripgrep)
         ("M-s g" . consult-git-grep)
         ("C-h a" . consult-apropos)
         ("M-s m" . consult-man)
         ("M-s h" . consult-org-heading)))

(use-package dabbrev
  :straight nil
  ;; Swap M-/ and C-M-/
  :bind (("M-/" . dabbrev-completion)
         ("C-M-/" . dabbrev-expand))
  ;; Other useful Dabbrev configurations.
  :custom
  (dabbrev-ignored-buffer-regexps '("\\.\\(?:pdf\\|jpe?g\\|png\\)\\'")))

(use-package sendmail
  :init
  (setq mail-specify-envelope-from t)
  (setq message-sendmail-envelope-from 'header)
  (setq mail-envelope-from 'header)
  :config
  (if (eq system-type 'darwin)
      (setq sendmail-program "/usr/local/bin/msmtp")
    (setq sendmail-program "/usr/bin/msmtp")))

(use-package notmuch
  :config
  (defun ymhg/notmuch-search-delete-mail (&optional beg end)
    "Delete a message."
    (interactive (notmuch-interactive-region))
    (if (member "deleted" (notmuch-search-get-tags))
        (notmuch-search-tag (list "-deleted"))
      (progn
        (notmuch-search-tag (list "+deleted" "-unread") beg end)
        (notmuch-search-next-thread))))

  (defun ymhg/notmuch ()
    "Delete a message."
    (interactive)
    (let ((tab (tab-bar--tab-index-by-name "*MAIL*")))
      (if tab (tab-bar-select-tab (1+ tab))
        (progn
          (tab-bar-new-tab-to)
          (tab-bar-rename-tab "*MAIL*")
          (notmuch)))))

  (defun ymhg/notmuch-show-delete-mail (&optional beg end)
    "Delete a message."
    (interactive (notmuch-interactive-region))
    (if (member "deleted" (notmuch-show-get-tags))
        (notmuch-show-tag (list "-deleted"))
      (progn
        (notmuch-show-tag (list "+deleted" "-unread") beg end)
        (notmuch-show-next-thread))))

  (setq notmuch-archive-tags '("-inbox" "-unread" "+archive"))
  (setq-default notmuch-search-oldest-first nil)

  (define-key notmuch-show-mode-map (kbd "d") #'ymhg/notmuch-show-delete-mail)
  (define-key notmuch-search-mode-map (kbd "d") #'ymhg/notmuch-search-delete-mail)

  (global-set-key (kbd "C-c o m") #'ymhg/notmuch)

  (setq notmuch-saved-searches
        '((:name "inbox" :query "date:last_month..this_month and tag:inbox not tag:deleted" :key "n")
          (:name "flagged" :query "tag:flagged" :key "f")
          (:name "sent" :query "tag:sent" :key "s")
          (:name "drafts" :query "tag:draft" :key "d")
          (:name "mailbox" :query "date:last_month..this_month and (tag:mailbox and tag:inbox) and not tag:deleted and not tag:sent" :key "m")
          (:name "imperial" :query "date:last_month..this_month and (tag:imperial and tag:inbox) and not tag:deleted and not tag:sent" :key "i")
          (:name "mailbox-archive" :query "date:last_month..this_month and (tag:mailbox and tag:archive) and not tag:deleted and not tag:sent" :key "a")
          (:name "imperial-archive" :query "date:last_month..this_month and (tag:imperial and tag:archive) and not tag:deleted and not tag:sent" :key "b")
          (:name "all recent" :query "date:last_month..this_month" :key "r")))

  (setq notmuch-fcc-dirs
        '(("yann@yannherklotz.com"          . "mailbox/Sent -inbox +sent -unread +mailbox -new")
          ("git@ymhg.org"                   . "mailbox/Sent -inbox +sent -unread +mailbox -new")
          ("yann.herklotz15@imperial.ac.uk" . "\"imperial/Sent Items\" -inbox +sent -unread +imperial -new")))

  (setq +notmuch-home-function (lambda () (notmuch-search "tag:inbox"))))

(use-package ol-notmuch)

(use-package ebib
  :bind (("C-c y b" . ebib)
         ("C-c [" . ebib-insert-citation))
  :init
  (defun ymhg/ebib-create-identifier (key _) key)
  (setq ebib-preload-bib-files '("~/Dropbox/bibliography/references.bib"))
  (setq ebib-notes-default-file "~/Dropbox/bibliography/notes.org")
  (setq ebib-notes-template "* %T\n:PROPERTIES:\n%K\n:NOTER_DOCUMENT: papers/%k.pdf\n:END:\n%%?\n")
  (setq ebib-keywords (expand-file-name "~/Dropbox/bibliography/keywords.txt"))
  (setq ebib-reading-list-file "~/Dropbox/bibliography/reading_list.org")
  (setq ebib-notes-storage 'multiple-notes-per-file)
  :config
  (add-to-list 'ebib-notes-template-specifiers '(?k . ymhg/ebib-create-identifier))
  (add-to-list 'ebib-file-search-dirs "~/Dropbox/bibliography/papers")
  (if (eq system-type 'darwin)
      (add-to-list 'ebib-file-associations '("pdf" . "open"))
    (add-to-list 'ebib-file-associations '("pdf" . nil)))
  (add-to-list 'ebib-citation-commands '(org-mode (("ref" "[cite:@%(%K%,)]"))))
  (add-to-list 'ebib-citation-commands '(context-mode (("cite" "\\cite[%(%K%,)]")
                                                       ("authoryear" "\\cite[authoryear][%(%K%,)]")
                                                       ("authoryears" "\\cite[authoryears][%(%K%,)]")
                                                       ("entry" "\\cite[entry][%(%K%,)]")
                                                       ("author" "\\cite[author][%(%K%,)]"))))

  (advice-add 'bibtex-generate-autokey :around
              (lambda (orig-func &rest args)
                (replace-regexp-in-string ":" "" (apply orig-func args))))
  (remove-hook 'ebib-notes-new-note-hook #'org-narrow-to-subtree))

(use-package ymh-ebib
  :straight nil
  :load-path "ymh-emacs"
  :config
  (define-key ebib-index-mode-map "D" #'ymh-ebib-download-pdf-from-doi))

(use-package spell-fu
  :hook text-mode
  :config
  (add-hook 'spell-fu-mode-hook
            (lambda ()
              (spell-fu-dictionary-add (spell-fu-get-ispell-dictionary "en_GB"))
              (spell-fu-dictionary-add (spell-fu-get-ispell-dictionary "de_DE"))
              (spell-fu-dictionary-add (spell-fu-get-ispell-dictionary "fr_FR"))
              (spell-fu-dictionary-add
               (spell-fu-get-personal-dictionary "fr-personal" "~/.aspell.en_GB.pws"))
              (spell-fu-dictionary-add
               (spell-fu-get-personal-dictionary "de-personal" "~/.aspell.de_DE.pws"))
              (spell-fu-dictionary-add
               (spell-fu-get-personal-dictionary "fr-personal" "~/.aspell.fr_FR.pws")))))

(use-package ledger-mode)

(use-package geiser
  :config
  ;;(unbind-key "C-." geiser-mode-map)
  ;;(unbind-key "C-." geiser-repl-mode-map)
  )

(use-package geiser-chicken
  :config
  (setq geiser-chicken-binary "chicken-csi"))

(use-package bufferlo
  :straight (:host github :repo "florommel/bufferlo")
  :defer nil
  :bind (("C-x b" . bufferlo-switch-to-buffer))
  :config
  (bufferlo-mode 1))

(use-package haskell-mode)

(use-package proof-general
  :config
  (setq proof-splash-enable nil)
  (setq proof-auto-action-when-deactivating-scripting 'retract)
  (setq proof-delete-empty-windows nil)
  (setq proof-multiple-frames-enable nil)
  (setq proof-three-window-enable nil)
  (setq proof-auto-raise-buffers nil)
  (setq coq-compile-before-require nil)
  (setq coq-compile-vos t)
  (setq coq-compile-parallel-in-background t)
  (setq coq-compile-keep-going nil)
  (setq coq-compile-quick 'no-quick)
  (setq coq-max-background-compilation-jobs 4)
  (setq coq-indent-modulestart 0)

  (defun ymhg--reset-coq-indentation ()
    "Reset slow indentation."
    (setq-local indent-line-function #'indent-relative))
  
  (add-hook 'coq-mode-hook #'ymhg--reset-coq-indentation t)
  ;;(define-key coq-mode-map (kbd "C-c TAB") #'smie-indent-line)
  )

(use-package alectryon
  :hook (coq-mode . alectryon-mode)
  :delight alectryon-mode
  :config
  (when (eq system-type 'darwin)
    (setq alectryon-executable "/nix/store/bvlk3hyrjdgl0sg93rrdr2z71hgza0m9-python3.9-alectryon-1.4.0/bin/alectryon"))
  (defun ymhg/alectryon-preview ()
    "Display an HTML preview of the current buffer."
    (interactive)
    (let* ((html-fname (make-temp-file "alectryon" nil ".html"))
           (args `("-r" "5" "-" ,html-fname)))
      (apply #'call-process-region nil nil "rst2html5" nil nil nil args)
      (message "Compilation complete")
      (browse-url html-fname)))
  (define-key alectryon-mode-map (kbd "C-c u t") #'alectryon-toggle)
  (define-key alectryon-mode-map (kbd "C-c u p") #'ymhg/alectryon-preview))

(use-package tex
  :straight auctex
  :init
  (setq TeX-auto-save t)
  (setq TeX-parse-self t)
  (setq-default TeX-master nil)
  (setq TeX-view-program-selection '((output-pdf "PDF Tools")))
  (setq TeX-source-correlate-start-server t)
  (setq-default TeX-command-extra-options "-shell-escape")
  (setq TeX-source-correlate-mode t)
  (setq TeX-source-correlate-method 'synctex)
  (setq reftex-plug-into-AUCTeX t)
  :config
  (add-hook 'TeX-after-compilation-finished-functions
            #'TeX-revert-document-buffer)
  (add-hook 'TeX-mode-hook #'reftex-mode)
  (add-hook 'TeX-mode-hook #'outline-minor-mode)
  (with-eval-after-load 'latex
    (define-key LaTeX-mode-map
      " "
      #'ymhg/electric-space)))

(use-package ox-hugo)
(use-package ox-gfm)

(use-package smartparens-config
  :straight smartparens
  :defer nil
  :config
  (smartparens-global-mode)
  (add-hook 'minibuffer-setup-hook #'turn-on-smartparens-strict-mode)

  (define-key smartparens-mode-map (kbd "C-M-f") #'sp-forward-sexp)
  (define-key smartparens-mode-map (kbd "C-M-b") #'sp-backward-sexp)

  (define-key smartparens-mode-map (kbd "C-M-d") #'sp-down-sexp)
  (define-key smartparens-mode-map (kbd "C-M-a") #'sp-backward-down-sexp)
  (define-key smartparens-mode-map (kbd "C-S-d") #'sp-beginning-of-sexp)
  (define-key smartparens-mode-map (kbd "C-S-a") #'sp-end-of-sexp)

  (define-key smartparens-mode-map (kbd "C-M-e") #'sp-up-sexp)
  (define-key smartparens-mode-map (kbd "C-M-u") #'sp-backward-up-sexp)
  (define-key smartparens-mode-map (kbd "C-M-t") #'sp-transpose-sexp)

  (define-key smartparens-mode-map (kbd "C-M-n") #'sp-forward-hybrid-sexp)
  (define-key smartparens-mode-map (kbd "C-M-p") #'sp-backward-hybrid-sexp)

  (define-key smartparens-mode-map (kbd "C-M-k") #'sp-kill-sexp)
  (define-key smartparens-mode-map (kbd "C-M-w") #'sp-copy-sexp)

  (define-key smartparens-mode-map (kbd "C-<right>") #'sp-forward-slurp-sexp)
  (define-key smartparens-mode-map (kbd "C-<left>") #'sp-forward-barf-sexp)
  (define-key smartparens-mode-map (kbd "C-M-<left>") #'sp-backward-slurp-sexp)
  (define-key smartparens-mode-map (kbd "C-M-<right>") #'sp-backward-barf-sexp)

  (define-key smartparens-mode-map (kbd "M-D") #'sp-splice-sexp)

  (define-key smartparens-mode-map (kbd "C-]") #'sp-select-next-thing-exchange)
  (define-key smartparens-mode-map (kbd "C-<left_bracket>") #'sp-select-previous-thing)
  (define-key smartparens-mode-map (kbd "C-M-]") #'sp-select-next-thing)

  (define-key smartparens-mode-map (kbd "M-F") #'sp-forward-symbol)
  (define-key smartparens-mode-map (kbd "M-B") #'sp-backward-symbol)

  (define-key smartparens-mode-map (kbd "C-\"") #'sp-change-inner)
  (define-key smartparens-mode-map (kbd "M-i") #'sp-change-enclosing)

  (bind-key "C-c f" (lambda () (interactive) (sp-beginning-of-sexp 2)) smartparens-mode-map)
  (bind-key "C-c b" (lambda () (interactive) (sp-beginning-of-sexp -2)) smartparens-mode-map)

  (bind-key ";" #'sp-comment emacs-lisp-mode-map)

  (bind-key [remap c-electric-backspace] #'sp-backward-delete-char smartparens-strict-mode-map)

  (sp-with-modes 'org-mode
    (sp-local-pair "=" "=" :wrap "C-=")))

(setq gc-cons-threshold (* 1024 1024 10))

(setq custom-file (concat user-emacs-directory "custom.el"))
(load custom-file)