Merge from LFSC (#26)

* Showing models as coq counter examples in tactic without constructing coq terms

* also read models when calling cvc4 with a file (deactivated because cvc4 crashes)

* Show counter examples with variables in the order they are quantified in the Coq goal

* Circumvent issue with ocamldep

* fix issue with dependencies

* fix issue with dependencies

* Translation and OCaml support for extract, zero_extend, sign_extend

* Show run times of components

* print time on stdout instead

* Tests now work with new version (master) of CVC4

* fix small printing issue

* look for date on mac os x

* proof of valid_check_bbShl: some cases to prove.

* full proof of "left shift checker".

*  full proof of "rigth shift checker".

* Support translation of terms bvlshr, bvshl but LFSC rules do not exists at the moment
Bug fix for bitvector extract (inverted arguments)

* Typo

* More modularity on the format of traces depending on the version of coq

* More straightforward definitions in Int63Native_standard

* Use the Int31 library with coq-8.5

* Use the most efficient operations of Int31

* Improved performance with coq-8.5

* Uniform treatment of sat and smt tactics

* Hopefully solved the problem with universes for the tactic

* Updated the installation instructions

* Holes for unsupported bit blasting rules

* Cherry-picking from smtcoq/smtcoq

* bug fix hole for bitblast

* Predefined arrays are not required anymore

* fix issue with coq bbT and bitof construction from ocaml

* bug fix in smtAtom for uninterpreted functions
fix verit test file

* fix issue with smtlib2 extract parsing

* It looks like we still need the PArray function instances for some examples (see vmcai_bytes.smt2)

* Solver specific reification:
Each solver has a list of supported theories which is passed to Atom.of_coq, this function creates uninterpreted functions / sorts for unsupported features.

* show counter-examples with const_farray instead of const for constant array definitions

* Vernacular commands to debug checkers.
Verit/Lfsc_Checker_Debug will always fail, reporting the first proof step of the certificate that failed be checked

* Update INSTALL.md

* show smtcoq proof when converting

* (Hopefully) repared the universes problems

* Corrected a bug with holes in proofs

* scripts for tests:
create a folder "work" under "lfsc/tests/", locate the benchmarks there.
create a folder "results" under "lfsc/tests/work/" in which you'll find the results of ./cvc4tocoq.

* make sure to give correct path for your benchs...

* Checker for array extensionality modulo symmetry of equality

* fix oversight with bitvectors larger than 63 bits

* some printing functions for smt2 ast

* handle smtlib2 files with more complicated equivalence with (= ... )

* revert: ./cvc4tocoq does not output lfsc proofs...

* bug fix one input was ignored

* Don't show verit translation of LFSC proof if environment variable DONTSHOWVERIT is set
(e.g. put export DONTSHOWVERIT="" in your .bashrc or .bashprofile)

* Also sort names of introduced variables when showing counter-example

* input files for which SMTCoq retuns false.

* input files for which SMTCoq retuns false.

* use debug checker for debug file

* More efficient debug checker

* better approximate number of failing step of certificate in debug checker

* fix mistake in ml4

* very first attempt to support goals in Prop

* bvs: comparison predicates in Prop and their <-> proofs with the ones in bool
farrays: equality predicate in Prop and its <-> proof with the one in bool.

* unit, Bool, Z, Pos: comparison and equality predicates in Prop.

* a typo fixed.

* an example of array equality in  Prop (converted into Bool by hand)...
TODO: enhance the search space of cvc4 tactic.

* first version of cvc4' tactic: "solves" the goals in Prop.
WARNING: supports only bv and array goals and might not be complete
TODO: add support for lia goals

* cvc4' support for lia
WARNING: might not be complete!

* small fix in cvc4' and some variations of examples

* small fix + support for goals in Bool and Bool = true + use of solve tactical
WARNING: does not support UF and INT63 goals in Prop

* cvc4': better arrangement

* cvc4': Prop2Bool by context search...

* cvc4': solve tactial added -> do not modify unsolved goals.

* developer documentation for the smtcoq repo

* cvc4': rudimentary support for uninterpreted function goals in Prop.

* cvc4': support for goals with Leibniz equality...
WARNING: necessary use of "Grab Existential Variables." to instantiate variable types for farrays!

* cvc4': Z.lt adapted + better support from verit...

* cvc4': support for Z.le, Z.ge, Z.gt.

* Try arrays with default value (with a constructor for constant arrays), but extensionality is not provable

* cvc4': support for equality over uninterpreted types

* lfsc demo: goals in Coq's Prop.

* lfsc demo: goals in Bool.

* Fix issue with existential variables generated by prop2bool.
- prop2bool tactic exported by SMTCoq
- remove useless stuff

* update usage and installation instructions

* Update INSTALL.md

* highlighting

* the tactic: bool2prop.

* clean up

* the tactic smt: very first version.

* smt: return unsolved goals in Prop.

* Show when a certificate cannot be checked when running the tactic instead of at Qed

* Tactic improvements
- Handle negation/True/False in prop/bool conversions tactic.
- Remove alias for farray (this caused problem for matching on this type in tactics).
- Tactic `smt` that combines cvc4 and veriT.
- return subgoals in prop

* test change header

* smt: support for negated goals + some reorganization.

* conflicts resolved + some reorganization.

* a way to solve the issue with ambiguous coercions.

* reorganization.

* small change.

* another small change.

* developer documentation of the tactics.

* developer guide: some improvements.

* developer guide: some more improvements.

* developer guide: some more improvements.

* developer guide: some more improvements.

* pass correct environment for conversion + better error messages

* cleaning

* ReflectFacts added.

* re-organizing developers' guide.

* re-organizing developers' guide.

* re-organizing developers' guide.

* removing unused maps.

* headers.

* artifact readme getting started...

* first attempt

* second...

* third...

* 4th...

* 5th...

* 6th...

* 7th...

* 8th...

* 9th...

* 10th...

* 11th...

* 12th...

* 13th...

* 14th...

* 15th...

* 16th...

* 17th...

* Update artifact.md

Use links to lfsc repository like in the paper

* 18th...

* 19th...

* 20th...

* 21st...

* 22nd...

* 23rd...

* 24th...

* 25th...

* 26th...

* 27th...

* 28th...

* Update artifact.md

Small reorganization

* minor edits

* More minor edits

* revised description of tactics

* Final pass

* typo

* name changed: artifact-readme.md

* file added...

* passwd chaged...

* links...

* removal

* performance statement...

* typos...

* the link to the artifact image updated...

* suggestions by Guy...

* aux files removed...

* clean-up...

* clean-up...

* some small changes...

* small fix...

* additional information on newly created files after running cvc4tocoq script...

* some small fix...

* another small fix...

* typo...

* small fix...

* another small fix...

* fix...

* link to the artifact image...

* We do not want to force vm_cast for the Theorem commands

* no_check variants of the tactics

* TODO: a veriT test does not work anymore

* Compiles with both versions of Coq

* Test of the tactics in real conditions

* Comment on this case study

* an example for the FroCoS paper.

* Fix smt tactic that doesn't return cvc4's subgoals

* readme modifications

* readme modifications 2

* small typo in readme.

* small changes in readme.

* small changes in readme.

* typo in readme.

* Sync with https://github.com/LFSC/smtcoq

* Port to Coq 8.6

* README

* README

* INSTALL

* Missing file

* Yves' proposition for installation instructions

* Updated link to CVC4

* Compiles again with native-coq

* Compiles with both versions of Coq

* Command to bypass typechecking when generating a zchaff theorem

* Solved bug on cuts from Hole

* Counter-models for uninterpreted sorts (improves issue #13)

* OCaml version note (#15)

* update .gitignore

* needs OCaml 4.04.0

* Solving merge issues (under progress)

* Make SmtBtype compile

* Compilation of SmtForm under progress

* Make SmtForm compile

* Make SmtCertif compile

* Make SmtTrace compile

* Make SatAtom compile

* Make smtAtom compile

* Make CnfParser compile

* Make Zchaff compile

* Make VeritSyntax compile

* Make VeritParser compile

* Make lfsc/tosmtcoq compile

* Make smtlib2_genconstr compile

* smtCommand under progress

* smtCommands and verit compile again

* lfsc compiles

* ml4 compiles

* Everything compiles

* All ZChaff unit tests and most verit unit tests (but taut5 and un_menteur) go through

* Most LFSC tests ok; some fail due to the problem of verit; a few fail due to an error "Not_found" to investigate

* Authors and headings

* Compiles with native-coq

* Typo

1 files changed, 65 insertions, 26 deletions

diff --git a/.gitignore b/.gitignore
index 75736be..3199ccb 100644
--- a/.gitignore
+++ b/.gitignore
@@ -1,42 +1,81 @@
 *.annot
+
+# ocamlbuild working directory
+_build/
+
+# ocamlbuild targets
+*.byte
+*.native
+
+# oasis generated files
+setup.data
+setup.log
+
+# generated by coq
+*.glob
+*.v.d
+*.aux
+*.vo
+*.d
+.lia.cache
+.nia.cache
+
+# cp targets of src/configure.sh:
+src/Makefile
+src/smtcoq_plugin.ml4
+src/versions/native/Structures.v
+src/g_smtcoq.ml4
+src/smtcoq_plugin.mlpack
+src/versions/standard/Int63/Int63.v
+src/versions/standard/Int63/Int63Native.v
+src/versions/standard/Int63/Int63Op.v
+src/versions/standard/Int63/Int63Axioms.v
+src/versions/standard/Int63/Int63Properties.v
+src/versions/standard/Array/PArray.v
+src/versions/standard/Structures.v
+
+# generated by the Makefile
+src/uninstall_me.sh
+
+# .ml files generated by ocamllex from a .mll, regenerate list using
+# find . -name '*.mll' | sed -e 's/^.\(.*\).$/\1/g'
+/src/smtlib2/smtlib2_lex.ml
+/src/smtlib2/sExprLexer.ml
+/src/lfsc/lfscLexer.ml
+/src/verit/veritLexer.ml
+
+# .ml files generated by ocamlyacc from a .mly, regenerate list using
+# find . -name '*.mly' | sed -e 's/^.\(.*\).$/\1/g'
+/src/smtlib2/sExprParser.ml
+/src/smtlib2/smtlib2_parse.ml
+/src/lfsc/lfscParser.ml
+/src/verit/veritParser.ml
+
+# .mli files generated by ocamlyacc from a .mly, regenerate list using
+find . -name '*.mly' | sed -e 's/^.\(.*\).$/\1i/g'
+/src/smtlib2/sExprParser.mli
+/src/smtlib2/smtlib2_parse.mli
+/src/lfsc/lfscParser.mli
+/src/verit/veritParser.mli
+
+# compiled OCaml files
 *.cmt
 *.cmti
-*.vtlog
-*.zlog
-*.cache
 *.cmi
 *.cmo
+*.cma
 *.cmx
 *.cmxs
 *.cmxa
 *.ml.d
 *.mli.d
 *.ml4.d
-*.native
 *.o
 *.a
-*.glob
-*.vo
-*.v.d
-*.aux
 *.mlpack.d
-src/Makefile
 src/extraction/.Makefile.swp
 src/extraction/smtcoq
-src/smtcoq_plugin.ml4
-src/smtlib2/smtlib2_parse.ml
-src/verit/veritParser.ml
-src/versions/native/Structures.v
-src/g_smtcoq.ml4
-src/smtcoq_plugin.mlpack
-src/smtlib2/smtlib2_lex.ml
-src/smtlib2/smtlib2_parse.mli
-src/verit/veritLexer.ml
-src/verit/veritParser.mli
-src/versions/standard/Array/PArray.v
-src/versions/standard/Int63/Int63.v
-src/versions/standard/Int63/Int63Axioms.v
-src/versions/standard/Int63/Int63Native.v
-src/versions/standard/Int63/Int63Op.v
-src/versions/standard/Int63/Int63Properties.v
-src/versions/standard/Structures.v
+
+# proof certificates
+*.vtlog
+*.zlog